PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774057.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 89aa    MW: 10524 Da    PI: 10.3569
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774057.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.91.7e-11249247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WTt   +++ +a +++  +   +W+ Iar +g g+++++++ ++  +
   XP_009774057.1  2 GSWTTKQNKRFEEALALYDRDtpdRWHNIARSVG-GKSAEEVRRHYKLL 49
                     89*****************99*************.***********876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.228154IPR017884SANT domain
SMARTSM007171.2E-7152IPR001005SANT/Myb domain
PfamPF002497.5E-9249IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-13257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-6356IPR009057Homeodomain-like
CDDcd001672.45E-7350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGSWTTKQNK RFEEALALYD RDTPDRWHNI ARSVGGKSAE EVRRHYKLLL KDIMQIENDQ  60
VPLPKYKPAQ TNVRAYANEQ RLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-264891193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774057.14e-61PREDICTED: protein RADIALIS-like 5
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U7W1Y59e-60A0A1U7W1Y5_NICSY; protein RADIALIS-like 5
STRINGXP_009774057.11e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-35RAD-like 6