PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774165.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 167aa    MW: 18028.4 Da    PI: 8.7343
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774165.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-10116160554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  XP_009774165.1 116 HIIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 160
                     889**********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-15109165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.005111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-12115165No hitNo description
Gene3DG3DSA:4.10.280.102.8E-14116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7116160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAGNPPEGYA AGDDFLEQIL AIPSYSSLPV TDIGACASSK TTSSDSVSGA SQLQQPPQPL  60
GLSLDNGRDD VSRSGAFAVK HPFQGQPTSS TAVTVPHPPA IRPRARARRG QATDPHIIAE  120
RLRRERISER IKALQELVPS CNKTDRAAML DEILDYVKFL RLQVKVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132317e-95BT013231.1 Lycopersicon esculentum clone 134477R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774165.11e-119PREDICTED: transcription factor UNE12-like isoform X2
SwissprotO227681e-34UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1U7WIU31e-118A0A1U7WIU3_NICSY; transcription factor UNE12-like isoform X2
STRINGXP_009774164.11e-105(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-21bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]