PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774258.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 462aa    MW: 52380.4 Da    PI: 7.1879
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.25.4e-1227116198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk+    + ++ +rl++p +fa+++ ++  ++  + le +sg++Wev++    + g++ l+ GW++F +   +  g f++F ++ rs f  +v+
  XP_009774258.1  27 FFKII--LSQHECSRLRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSEGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVT 113
                     66766..66677789***********5454444..***************..999999**************************999999..888 PP

                     EE- CS
              B3  96 vfr 98 
                     vf+
  XP_009774258.1 114 VFD 116
                     887 PP
2B3573.5e-18239320489
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      + ps+v++ ++l++p kfa+++ +++++  +l+l+ + +  W+vk+  + + g   +t GWk Fv +n+Lk+gD++v++++++++
  XP_009774258.1 239 FMHPSYVTRPHNLSIPLKFARKYFMQNRG--KLVLRVPGSGFWTVKC--TLRTGNAKITCGWKAFVLDNKLKSGDVCVLEVIKDTK 320
                     5789*******************777555..7***************..666666779**********************988643 PP
3B347.33.7e-15368455496
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + ps+v+  + l++++  a+++   +++  +++l+ ++ rsW +++++  k gr  l +GWk+Fv++n +k gD++vF+ ++r++  ++v +
  XP_009774258.1 368 PMQPSYVSGPS-LTISRVIASKFF--PTRYSDVVLQVPNKRSWALNCTVGTKNGR--LNSGWKKFVQDNSIKIGDVCVFEQVSRTKLLFNVYI 455
                     56677777776.999999998886..345559***************77555555..***********************6665555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1819118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1721118IPR015300DNA-binding pseudobarrel domain
CDDcd100177.34E-1225116No hitNo description
PROSITE profilePS5086310.88425118IPR003340B3 DNA binding domain
PfamPF023621.3E-827115IPR003340B3 DNA binding domain
SMARTSM010198.5E-828118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-24228327IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-22229322IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-17234330No hitNo description
SMARTSM010192.1E-13235332IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365236330IPR003340B3 DNA binding domain
PfamPF023625.4E-16238321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.8E-23357456IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20358456IPR015300DNA-binding pseudobarrel domain
CDDcd100176.08E-18363457No hitNo description
PROSITE profilePS5086312.111364459IPR003340B3 DNA binding domain
SMARTSM010192.7E-11365459IPR003340B3 DNA binding domain
PfamPF023622.3E-13369456IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAAKPQLQNG EGSSHWKSST NITQPKFFKI ILSQHECSRL RIPEDFASRY CKNMLNPVYL  60
EVPSGEVWEV EVVHSEGQIC LGIGWQDFSD FYSISCGHFL MFGYNARSHF NVTVFDLSAS  120
EIEYPTKEIE SDDSIDISDV VEHSVENLSH GPLGQERKRK RQERESEDDI PVNVQTKVIE  180
EEESQGNVVS LERSEGCREQ EQQSNIITSK SDTERDEERA ENYQRAKAFK SKNPFIISFM  240
HPSYVTRPHN LSIPLKFARK YFMQNRGKLV LRVPGSGFWT VKCTLRTGNA KITCGWKAFV  300
LDNKLKSGDV CVLEVIKDTK LLLIDVTIFP GVSDSTNESI NPEPSVPCSP AYQRAKAFTS  360
ENPFFIYPMQ PSYVSGPSLT ISRVIASKFF PTRYSDVVLQ VPNKRSWALN CTVGTKNGRL  420
NSGWKKFVQD NSIKIGDVCV FEQVSRTKLL FNVYIFPAVE GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1520832921140B3 domain-containing transcription factor VRN1
4i1k_B2e-1520832921140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154042e-38AC215404.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0163K16, complete sequence.
GenBankHG9755142e-38HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774258.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1U7W6L70.0A0A1U7W6L7_NICSY; B3 domain-containing transcription factor VRN1-like
STRINGXP_009774258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-18related to vernalization1 1