PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774316.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25829.4 Da    PI: 10.0335
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.86.8e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  XP_009774316.1  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSS 59
                    79***********************************************96 PP
2K-box100.81.9e-3379173599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++   +e+++ e+ kL ++ie +qr++Rh+ G+dL++Lsl+eLq+Leqq++++lk+iRs+Kn+l++e+i+elqkkek+lqe+n++++kkl+
  XP_009774316.1  79 KLNANDVDPMENWTLEYPKLMSRIELIQRNIRHYTGQDLDPLSLRELQSLEQQMDTALKRIRSRKNQLMHESISELQKKEKALQEQNNSMTKKLK 173
                     55556667789*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-34292IPR002100Transcription factor, MADS-box
CDDcd002654.14E-32276No hitNo description
PRINTSPR004044.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2886172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.60488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSE  60
SSMESILERY ERYSYAERKL NANDVDPMEN WTLEYPKLMS RIELIQRNIR HYTGQDLDPL  120
SLRELQSLEQ QMDTALKRIR SRKNQLMHES ISELQKKEKA LQEQNNSMTK KLKDEEKVQS  180
GKIQPNSGQN SATFMLPQQP PPQSHQLPNL TIGYSLSLTH TQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-21174173MEF2 CHIMERA
6byy_B9e-21174173MEF2 CHIMERA
6byy_C9e-21174173MEF2 CHIMERA
6byy_D9e-21174173MEF2 CHIMERA
6bz1_A1e-20174173MEF2 CHIMERA
6bz1_B1e-20174173MEF2 CHIMERA
6bz1_C1e-20174173MEF2 CHIMERA
6bz1_D1e-20174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352450.0AF335245.1 Petunia x hybrida MADS-box transcription factor FBP29 (FBP29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774316.11e-164PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X3
SwissprotQ6E6S71e-101AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1U7WAQ81e-162A0A1U7WAQ8_NICSY; truncated transcription factor CAULIFLOWER A-like isoform X3
STRINGXP_009774314.11e-162(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-83MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]