PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009774483.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 261aa MW: 29073.2 Da PI: 9.273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009774483.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	69	120	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR++ Ns + Lr+llP + + kK s ++ ++++YI +L XP_009774483.1 69 KKLNHNASERDRRKKFNSLCSSLRSLLPAtD---HTKKISFPVTVARVIKYIPDL 120 6789***********************55...7777************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.824	68	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-13	69	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-9	69	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-10	69	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-6	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MMAVSSPLFS NFGVCLADPK NKKLNTIEAP LSTGIPVHYS SSQPSIVHSE FKNFEEINGD 60 NDHLDGTVKK LNHNASERDR RKKFNSLCSS LRSLLPATDH TKKISFPVTV ARVIKYIPDL 120 KKEVGGLTQK KEDLTLRSIP KKEYSADFNN KQTIIKGGIQ SSLSVISANQ VGNREVIIHI 180 SILKTNKSSF AEAVSELEEE GLLLLNASSF ETLGDRVFYN LHFQAQGTLP INVQILRDKL 240 LSYYEKEDKL LPPWISGSLT T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774483.1	0.0	PREDICTED: transcription factor bHLH100-like isoform X1
Refseq	XP_016465934.1	0.0	PREDICTED: transcription factor bHLH100-like isoform X1
TrEMBL	A0A1S3ZNR3	0.0	A0A1S3ZNR3_TOBAC; transcription factor bHLH100-like isoform X1
TrEMBL	A0A1U7W795	0.0	A0A1U7W795_NICSY; transcription factor bHLH100-like isoform X1
STRING	XP_009774483.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-35	bHLH family protein