PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774580.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 305aa    MW: 33339 Da    PI: 7.6779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000222012391255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_009774580.1 201 RKEKLGDRITALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 239
                     5567778899999999987.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.63E-6183243No hitNo description
PROSITE profilePS5088811.28189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-8199247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-10199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAGNPTNNWW SMMMNGSMHP NHESQQFSSS SSSSSSQHFY GSSNYLADIN IPSHDFPRSW  60
SQLLLSGLSG EQEKSGMSHY HQYKKLQEKW EEVQSLNSIN PSSSCFRVPV VDVKPQVVGQ  120
VLYGNYQDLP AASSPANSCV TTTLSDNILN YSGNKITSKV EAKHQHPDDS SECNSTSRGG  180
VTKKARVQHS SAQPSLKLQV RKEKLGDRIT ALHQLVSPFG KTDTASVLSE AIGYIRFLQG  240
QIQALSSPYM GNVEGSMGHT HQQSDSQVKD LRSRGLCLVP ISCTQHVGND TVGDYWAPAL  300
GGGYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774580.10.0PREDICTED: transcription factor bHLH68-like isoform X1
RefseqXP_016489360.10.0PREDICTED: transcription factor bHLH68-like isoform X1
SwissprotQ8S3D17e-48BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1S4BKI50.0A0A1S4BKI5_TOBAC; transcription factor bHLH68-like isoform X1
TrEMBLA0A1U7WJZ40.0A0A1U7WJZ4_NICSY; transcription factor bHLH68-like isoform X1
STRINGXP_009774580.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]