PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774929.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 25431.9 Da    PI: 9.9436
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.5e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g++yeys+
  XP_009774929.1  9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRVYEYSN 59
                    79***********************************************95 PP
2K-box74.13.8e-2579164691
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                        ++e +a+ +qqe++kL+++i+ +q+++Rhl+Ge+++sL+++eL+qLe++Le++l++iRskK+  l ++   l+ k  e+++ +
  XP_009774929.1  79 AYTTQELNAQFYQQESKKLRQQIQLMQNTNRHLVGEGVSSLNVRELKQLENRLERGLTRIRSKKEIQLEQENAFLRSKIAENERLQ 164
                     33478999**********************************************************************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.74161IPR002100Transcription factor, MADS-box
CDDcd002653.12E-43278No hitNo description
SuperFamilySSF554551.44E-32279IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014863.4E-1883159IPR002487Transcription factor, K-box
PROSITE profilePS5129713.54587175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFST RGRVYEYSNT  60
NIKATIERYK KATAETSSAY TTQELNAQFY QQESKKLRQQ IQLMQNTNRH LVGEGVSSLN  120
VRELKQLENR LERGLTRIRS KKEIQLEQEN AFLRSKIAEN ERLQELSMMP AAGQEQDYNA  180
FQQYYARNML QLNMMEGMQP SNNYDPLLSA DKKSLHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-21169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-21169169Myocyte-specific enhancer factor 2B
1tqe_R2e-21169169Myocyte-specific enhancer factor 2B
1tqe_S2e-21169169Myocyte-specific enhancer factor 2B
6c9l_A2e-21169169Myocyte-specific enhancer factor 2B
6c9l_B2e-21169169Myocyte-specific enhancer factor 2B
6c9l_C2e-21169169Myocyte-specific enhancer factor 2B
6c9l_D2e-21169169Myocyte-specific enhancer factor 2B
6c9l_E2e-21169169Myocyte-specific enhancer factor 2B
6c9l_F2e-21169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX818521e-144X81852.1 P. hybrida mRNA for FBP11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774929.11e-160PREDICTED: agamous-like MADS-box protein AGL11 isoform X2
SwissprotF6I4574e-97AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A1U7WJT61e-158A0A1U7WJT6_NICSY; agamous-like MADS-box protein AGL11 isoform X2
STRINGXP_009774915.11e-155(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]