PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774955.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 488aa    MW: 54683.7 Da    PI: 7.6409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774955.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1831121199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d   s+ l++p +fa+  ++   ++++  led+sg++W+v +  r ++g+  +++GW  F +++gLk gDf+vF++++ + f   v+
  XP_009774955.1  31 FFKVM--IDKRFSKVLYFPPRFARLVSHL--TNQETYLEDSSGQKWKVGI--RIHKGSLAIREGWHAFSSEHGLKIGDFLVFHYIQGQHF--IVQ 117
                     88999..78888889********888655..4558***************..999999***************************97777..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f +
  XP_009774955.1 118 IFGT 121
                     9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2229124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.71929122IPR003340B3 DNA binding domain
SuperFamilySSF1019367.65E-2329124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-2030119No hitNo description
SMARTSM010193.3E-1531122IPR003340B3 DNA binding domain
PfamPF023621.6E-1631120IPR003340B3 DNA binding domain
PROSITE profilePS508638.374385483IPR003340B3 DNA binding domain
SMARTSM010190.39387481IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-10395479IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-10398479IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-7420479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MVHQNEACEK CTQTCLLIHG QRDPSPIVNS FFKVMIDKRF SKVLYFPPRF ARLVSHLTNQ  60
ETYLEDSSGQ KWKVGIRIHK GSLAIREGWH AFSSEHGLKI GDFLVFHYIQ GQHFIVQIFG  120
TSGCQKISFD NGTRTGKKRR RTNCKATSQD ELLPEIDINS RKKWNSTHSD TAVPESEMAD  180
HEAVTTTFAS TIDADTGILE IVHEAEAISN ILQGEDGPRN HVSTNSISQR ESSLVDEVPV  240
EMELLSFQAP VHFLDIGITQ TEKISEPVND ILLLGQKDEN VHNMGLISST SSAEKSGSHL  300
VLPSNKESRC SNQATREKSN KASHIDKREL KEMAAKTDCS AEKLNGKEPK LIEKDGQGFL  360
RAVSGNNKVI KSEPADSGDT SFPDAGNFSC LLRVDGRNFL ELPQSWPQVL TGRKKLEHST  420
IYLQGPDDRP WPVTYHERAG TKVLASRWAL FTAAYGIKPG DECRFQVLNL SERRFKVHIG  480
HKLRCYSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774955.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
TrEMBLA0A1U7WL250.0A0A1U7WL25_NICSY; B3 domain-containing protein Os02g0598200-like isoform X2
STRINGXP_009774954.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-12B3 family protein