PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009774956.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 365aa    MW: 40573.6 Da    PI: 6.9537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009774956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.9e-1931121199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkv+   d   s+ l++p +fa+  ++   ++++  led+sg++W+v +  r ++g+  +++GW  F +++gLk gDf+vF++++ + f   v+
  XP_009774956.1  31 FFKVM--IDKRFSKVLYFPPRFARLVSHL--TNQETYLEDSSGQKWKVGI--RIHKGSLAIREGWHAFSSEHGLKIGDFLVFHYIQGQHF--IVQ 117
                     88999..88888889********888655..4558***************..999999***************************97777..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +f +
  XP_009774956.1 118 IFGT 121
                     9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.71929122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-2229124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2329124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-2130119No hitNo description
PfamPF023629.6E-1731120IPR003340B3 DNA binding domain
SMARTSM010193.3E-1531122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MVHQNEACEK CTQTCLLIHG QRDPSPIVNS FFKVMIDKRF SKVLYFPPRF ARLVSHLTNQ  60
ETYLEDSSGQ KWKVGIRIHK GSLAIREGWH AFSSEHGLKI GDFLVFHYIQ GQHFIVQIFG  120
TSGCQKISFD NGTRTGKKRR RTNCKATSQD ELLPEIDINS RKKWNSTHSD TAVPESEMAD  180
HEAVTTTFAS TIDADTGILE IVHEAEAISN ILQGEDGPRN HVSTNSISQR ESSLVDEVPV  240
EMELLSFQAP VHFLDIGITQ TEKISEPVND ILLLGQKDEN VHNMGLISST SSAEKSGKGS  300
HLVLPSNKES RCSNQATREK SNKASHIDKR ELKEMAAKTD CSAEKLNGIT TKLAASSDRQ  360
EKAGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774956.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X3
TrEMBLA0A1U7WCJ30.0A0A1U7WCJ3_NICSY; B3 domain-containing protein Os02g0598200-like isoform X3
STRINGXP_009774954.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.17e-13B3 family protein