PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009775051.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 419aa MW: 44840.4 Da PI: 8.5817

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009775051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.2	4.1e-40	116	221	5	112
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ka 90 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ XP_009775051.1 116 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfI- 209 899***************************************************************9997777777777633333333333441. PP TCP 91 aksaakskksqksaasalnlak 112 + a+++l +++ XP_009775051.1 210 ----------HGGATTMLGFHH 221 ..........333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.5E-38	119	247	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	119	173	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MEFMEPHRKK QSRGSSTSGT DHHHHQHAQH QQQQQHNQET PSSLQLVSPH QSQPDPPTPG 60 SNQPHPHGPF MGSISMQSRT LISPPSANNS STSTTPTTTP TETPTPNNIL STKVVKKPSK 120 DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP 180 ANFSTLNVSL RSSGTTISAP PSKSAPLFIH GGATTMLGFH HQLSNAGFGQ DPDENNYMKK 240 RLREDTSGAT SPSGDKPERT GVQPPEPGSD SKPGSSQTSS FIPAPAMWAV APAAGNVGNA 300 FWMLPVSGGT SSTTASVGVA QPDHQLWRSR IGGFEFPGGG RFSPVQLGSM VLQQSQPVQQ 360 LGLGVTETNM GMLSSMNNAY NSSGNNRVDL GMNLEQHHHH QNQTQGSDSG DENHKDSQS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MEFMEPHRKK QSRGSSTSGT DHHHHQHAQH QQQQQHNQET PSSLQLVSPH QSQPDPPTPG  60
SNQPHPHGPF MGSISMQSRT LISPPSANNS STSTTPTTTP TETPTPNNIL STKVVKKPSK  120
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP  180
ANFSTLNVSL RSSGTTISAP PSKSAPLFIH GGATTMLGFH HQLSNAGFGQ DPDENNYMKK  240
RLREDTSGAT SPSGDKPERT GVQPPEPGSD SKPGSSQTSS FIPAPAMWAV APAAGNVGNA  300
FWMLPVSGGT SSTTASVGVA QPDHQLWRSR IGGFEFPGGG RFSPVQLGSM VLQQSQPVQQ  360
LGLGVTETNM GMLSSMNNAY NSSGNNRVDL GMNLEQHHHH QNQTQGSDSG DENHKDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775051.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9C518	3e-69	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U7WCU1	0.0	A0A1U7WCU1_NICSY; transcription factor TCP23-like
STRING	XP_009775051.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	8e-60	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]