PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775258.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 425aa    MW: 48037.1 Da    PI: 6.1921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11255302254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+++N++f  Lr+++P+      +  +Ka+ L  Av YI++L
  XP_009775258.1 255 QMNHVEAERQRREKLNHRFYMLRSVVPQV-----TGIDKASLLSDAVAYINEL 302
                     689*************************7.....579*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-82468IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142153.2E-2670161IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.22E-13251306No hitNo description
PROSITE profilePS5088816.037253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16253314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9255302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15256314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDELIFPSSF SASISQENQP STFQQRLQYI LKSQTNCWAY AIFWQTTSNK DNNGSFFLTC  60
GDGHFQGSNK DVEWFYVLSL AKSYSGNEGV IGKAFTSTAS FVWLTGAQLL QFCSCERAKE  120
AQYNGVKTLV CVPISNGVLE LGSSDIIKED WTLVQQVKSL FCSVQENGPM NFLDQNTIYF  180
ANFDFVTGMQ KDVQESDNSS KKVATTSHAS FLDSELSNSD CQLLEYPVQK SRVGSKIRRT  240
YRKRGRKHGV DCDKQMNHVE AERQRREKLN HRFYMLRSVV PQVTGIDKAS LLSDAVAYIN  300
ELKAKVDKLE SKLHTNLELK KKPEMEHNDD VDNQSSTNSV DHVEVKMIGP DAMIRVQSED  360
VNYPSTRLMC ALQDLELHVY HANISSVNNI VVQDIVIRDV PNKGLKTEDG LRAAILRSLE  420
QIEDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-21221618192Transcription factor MYC3
4rqw_B1e-21221618192Transcription factor MYC3
4rs9_A1e-21221618192Transcription factor MYC3
4yz6_A1e-21221618192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-42HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755222e-42HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775258.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A1U7W9E60.0A0A1U7W9E6_NICSY; transcription factor MYC2-like
STRINGXP_009775258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-66bHLH family protein