PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009775672.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 236aa MW: 26797.7 Da PI: 7.1968

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009775672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.7e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F+++ L H++ H XP_009775672.1 78 YECQYCFRNFPTSQALGGHQNAH 100 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.79E-6	75	105	No hit	No description
Pfam	PF13912	1.0E-5	78	102	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.323	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDKTEREAVD FMNVETFSPF IRPPPPPVIE KPIRLFGKEL GGGSNAMSES IVHDEPETNT 60 VNYGYKESHI NEESNRKYEC QYCFRNFPTS QALGGHQNAH KRERQNAKRA HLQSALAHEA 120 NIYGIMNNHR LGEPAAPSTS RHSTWNNINN STRFYGNYHG NTVISPYSQT PINRNPLAFW 180 RIPPADHQNS SSNLGFPNDD LKPFPLMAKS PNCDSRFGYE PKEGVHQDHL SLDLHL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775672.1	1e-178	PREDICTED: zinc finger protein 8
TrEMBL	A0A1U7W6M2	1e-177	A0A1U7W6M2_NICSY; zinc finger protein 8
STRING	XP_009775672.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1473	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	9e-32	zinc finger protein 8