PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009775693.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 221aa    MW: 25136.1 Da    PI: 8.4649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009775693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-0584106123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k Fs++  L  H++ H
  XP_009775693.1  84 FECHYCLKEFSNSQALGGHQNAH 106
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.3E-581110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-681111No hitNo description
PROSITE profilePS5015711.44884111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEKDISTFFH PSCNIGGNES FSKSGMKIKR LKIFGFELDP CQKYMKGELG DRESVNSSCS  60
TISAGREKQP SNDAKDDDPT EKKFECHYCL KEFSNSQALG GHQNAHKKER MRKKRLQLQE  120
TKARLSYYLQ AFQSSNNNIT NYHGLTSSPY FSDPNLRYDS SNLFTLFEES NISFSSYDQD  180
SQESCTFTLT HGKRSKEKLS SLPNLASKQR CKPLDLELGL G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775693.11e-163PREDICTED: zinc finger protein 5-like isoform X1
TrEMBLA0A1U7WAM11e-161A0A1U7WAM1_NICSY; zinc finger protein 5-like isoform X1
STRINGXP_009775693.11e-162(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-15C2H2 family protein