PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776013.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 248aa    MW: 27035.1 Da    PI: 6.518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.2e-10132179455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_009776013.1 132 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 179
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.24E-10126183No hitNo description
SuperFamilySSF474592.49E-17126196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17128195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDPMMNEARA FQAAAPNPPF NLAEIWPFPI NAGAAMPYAN GDHHFPINDP MLLDHRTNHR  60
SGSARKRRED DESAKGVSTS GNGLATGSNE NHESGGDGEG NSGKSADQPA KSAEPPKDYI  120
HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK VIGKALVLDE IINYVQSLQR  180
QVEFLSMKLE AVNTRVPPNI EGFPTKDLGQ QTFEANAMAF GSQGTREYAG GTSPDWLHMQ  240
IGGGFERA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776013.10.0PREDICTED: transcription factor bHLH79 isoform X2
RefseqXP_016481157.10.0PREDICTED: transcription factor bHLH79-like isoform X2
SwissprotQ69WS37e-71BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A1S4AX030.0A0A1S4AX03_TOBAC; transcription factor bHLH79-like isoform X2
TrEMBLA0A1U7WBK20.0A0A1U7WBK2_NICSY; transcription factor bHLH79 isoform X2
STRINGXP_009776012.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-85BIG PETAL P