PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776067.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 114aa MW: 13137 Da PI: 6.5631

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.9	3.5e-15	3	49	4	50
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 e++ n++ t+ R++ i K ELS+LCd++ + ii s++g+l++++ XP_009776067.1 3 EENQNKKKTYQVRKECIKRKTMELSTLCDIKCCTIITSPQGELQTWP 49 67889999**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.876	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-15	3	71	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-10	3	48	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MAEENQNKKK TYQVRKECIK RKTMELSTLC DIKCCTIITS PQGELQTWPE NLDAVKQVLN 60 LYTKTLSPNK KANEELSEEE IDILTLVESK LDAVNNRIRY LENKNAGFVS NNKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776067.1	9e-78	PREDICTED: MADS-box transcription factor 56-like
Refseq	XP_016469068.1	9e-78	PREDICTED: agamous-like MADS-box protein AGL81
TrEMBL	A0A1S3ZXJ4	2e-76	A0A1S3ZXJ4_TOBAC; agamous-like MADS-box protein AGL81
TrEMBL	A0A1U7W7S8	2e-76	A0A1U7W7S8_NICSY; MADS-box transcription factor 56-like
STRING	XP_009776067.1	4e-77	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26880.1	2e-11	AGAMOUS-like 26