PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776202.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 218aa    MW: 25053.5 Da    PI: 10.4145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776202.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-131793997
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                      +k+g l +p  f+ ++ +g+++   +  +  + +++W+vk+  ++++    +++ W eF++ +gL+ gD+++F+++g++ef   v++f
  XP_009776202.1 17 PGFKNG-LKIPIGFL-KYlKGQNN---ERAILRKGSKKWRVKV--NGRR----FEASWAEFAQNHGLQLGDMLIFRHEGNMEF--EVTMF 93
                    566666.********.56455533...345667899*******..8887....9************************99999..66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-19395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-16594IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505896IPR003340B3 DNA binding domain
CDDcd100171.64E-14993No hitNo description
SMARTSM010194.9E-131196IPR003340B3 DNA binding domain
PfamPF023625.0E-101993IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKKVSPKKPR FFKPILPGFK NGLKIPIGFL KYLKGQNNER AILRKGSKKW RVKVNGRRFE  60
ASWAEFAQNH GLQLGDMLIF RHEGNMEFEV TMFESRDNIW DSSDGCTTTS ISEEKKGNHK  120
TKHSKKTSTY MAYSSSQGIA SIQQESRPKS SLGQNGVAGL YPGVNFAHKE PEKDHNPPRR  180
SMDLTEAYLV SLAQVYDDQK VKMEEDLERR KKERNLKD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776202.11e-163PREDICTED: B3 domain-containing protein REM6-like
TrEMBLA0A1U7W8721e-162A0A1U7W872_NICSY; B3 domain-containing protein REM6-like
STRINGXP_009776202.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.13e-23B3 family protein