PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776403.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CPP
Protein Properties Length: 243aa    MW: 26902.6 Da    PI: 8.7485
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.85.9e-15117156242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C++C+N+ e+
  XP_009776403.1 117 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCNNCHNNVEN 156
                     89**************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.2E-16116156IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163419.404117208IPR005172CRC domain
PfamPF036386.6E-12118153IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDDPDCPGCS ATTGQPHVAV DFPAKKLARQ LDFTVFGGSS GQSPTTVMPE QTKQIQPLVK  60
SIQLQRPQTQ QHMVLMPTKQ TAVPTTHPSI RPPLKPDSPR ARPRQSVSEV KDGTPKKQKQ  120
CNCKHSRCLK LYCECFASGI YCDGCNCNNC HNNVENEPAR REAVEATLER NPHAFRPKIA  180
SSPHGARDDK EEIGDVLVLE KHNKGCHCLT TNNCCSSSFS FNSSRSLFVV LSSSRLKGRW  240
VCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-12108208190Protein lin-54 homolog
5fd3_B1e-12108208190Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-75HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776403.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD12e-63TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1U7WCM11e-180A0A1U7WCM1_NICSY; protein tesmin/TSO1-like CXC 5
STRINGXP_009776403.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-57Tesmin/TSO1-like CXC domain-containing protein