PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009776647.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 429aa MW: 46704.5 Da PI: 9.4111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009776647.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	196	218	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H + H XP_009776647.1 196 TCHKCGEQFGKWEALESHHLSkH 218 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	197	218	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.88E-21	220	428	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-7	233	408	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGGG GGGSRSGCSR 60 SIANLKDVIH GSKRHLEKPP SCSPRSIGSS EFLNPITHEV ILSNSRCELK ITSFNGFQES 120 SPSSTFVGTL RPGTPGPGGN PTMHYFNSGC RNSVATPTRR SASFLVDKEG SANSFPCKTT 180 RHSLDNDVNG TSSGVTCHKC GEQFGKWEAL ESHHLSKHAV SELLEGDSSR KIVEIICRSS 240 WLKSESHVGR IERVLKVHNT QKTLARFEEY REMVKIKASK LPKKHPRCIA DGNELLRFYG 300 TTLACGLGMN GTCSLCVSDK CCVCRIIRNG FTTKKELKGG IGVFTTSTSA RAYECIELSE 360 DDPSLRKALI VCRVVAGRVH RPLENIQEMA GQTGFDSLAG KVGVYSNIEE LYLLNPRALL 420 PCFVVICKA

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLSTIL TRKGGGGGGG GGGSRSGCSR  60
SIANLKDVIH GSKRHLEKPP SCSPRSIGSS EFLNPITHEV ILSNSRCELK ITSFNGFQES  120
SPSSTFVGTL RPGTPGPGGN PTMHYFNSGC RNSVATPTRR SASFLVDKEG SANSFPCKTT  180
RHSLDNDVNG TSSGVTCHKC GEQFGKWEAL ESHHLSKHAV SELLEGDSSR KIVEIICRSS  240
WLKSESHVGR IERVLKVHNT QKTLARFEEY REMVKIKASK LPKKHPRCIA DGNELLRFYG  300
TTLACGLGMN GTCSLCVSDK CCVCRIIRNG FTTKKELKGG IGVFTTSTSA RAYECIELSE  360
DDPSLRKALI VCRVVAGRVH RPLENIQEMA GQTGFDSLAG KVGVYSNIEE LYLLNPRALL  420
PCFVVICKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU560900	0.0	EU560900.1 Capsicum annuum clone DEG190-B transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776647.1	0.0	PREDICTED: uncharacterized protein LOC104226368
TrEMBL	A0A1U7W9G8	0.0	A0A1U7W9G8_NICSY; uncharacterized protein LOC104226368
STRING	XP_009776647.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-177	C2H2 family protein