PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009776788.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 362aa    MW: 40997.9 Da    PI: 6.5104
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009776788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.33e-3391201199
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k ltpsdv+k++rlv+pk++ae++            ++ +e++  l +edesg+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+
  XP_009776788.1  91 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnnnsnESGTEKGLLLGFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVLFE 185
                     99****************************99999888555668999************************************************ PP

                     E-SS.SEE..EEEEE-S CS
              B3  84 ldgr.sefelvvkvfrk 99 
                     ++ r ++ +l+++++r+
  XP_009776788.1 186 RH-RfDGDRLFIGWRRR 201
                     75.559999******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-4283210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3186200IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-2989191No hitNo description
SMARTSM010191.7E-2791202IPR003340B3 DNA binding domain
PROSITE profilePS5086314.43891202IPR003340B3 DNA binding domain
PfamPF023621.8E-3091202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSINHISSSE LPETVWWTKQ QQYMMMDSSS KKTSSPSLFY HHHPPTPPMF GFNLNNMSSN  60
EEDEELEEQI TEDKDQNIEQ REEEIPKEHL FEKPLTPSDV GKLNRLVIPK QHAEKYFPLS  120
GNNNNNSNES GTEKGLLLGF EDESGKSWRF RYSYWNSSQS YVLTKGWSRF VKEKRLDAGD  180
IVLFERHRFD GDRLFIGWRR RNTAVSASVQ ESSAVVAPPG MVGGGGWAQV YYGGSGGHPY  240
PGAALPYQPD CLHAGRGVLQ NQTTTSVNNT RRQVRLFGVN LDCEADEPSW SEPPSTPDGG  300
GSSTSSHHHQ GPGQGQASQH YYQYQFQHSK PHVAASSYNN INHNHMDMNF SRDVNQMRYH  360
QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-50872014113B3 domain-containing transcription factor NGA1
5os9_B6e-50872014113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776788.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9FNI38e-68Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A1U7WDQ70.0A0A1U7WDQ7_NICSY; B3 domain-containing protein At2g36080-like
STRINGXP_009776788.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-62B3 family protein