PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009777118.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

S1Fa-like

Protein Properties

Length: 69aa MW: 7610.22 Da PI: 10.8655

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009777118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	133.4	5.6e-42	3	69	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + veakG+nPGlivll++ggl+l fl+gny+lyvyaqk+lPP+kkkP+s+kk+kre+lkqGv++PGe XP_009777118.1 3 NDVEAKGFNPGLIVLLLIGGLVLAFLIGNYVLYVYAQKTLPPKKKKPLSRKKMKRERLKQGVSAPGE 69 689***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	5.0E-4	3	69	No hit	No description
Pfam	PF04689	4.0E-39	5	69	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MANDVEAKGF NPGLIVLLLI GGLVLAFLIG NYVLYVYAQK TLPPKKKKPL SRKKMKRERL 60 KQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254722	2e-68	AC254722.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-53k5 map 10, complete sequence.
GenBank	HG975522	2e-68	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777118.1	6e-42	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q42337	1e-15	S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBL	A0A1U7WEN5	1e-40	A0A1U7WEN5_NICSY; DNA-binding protein S1FA-like
STRING	XP_009777118.1	2e-41	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3174	22	49