PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009777417.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 270aa MW: 30192.7 Da PI: 5.6156

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009777417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.6	1.6e-21	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e+++ l +++e++V++WFqNrRa+ k+ XP_009777417.1 90 RQRWTPTPMQLQILERIFDQgNGTPSKQKIKEITSDLsqhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	101.6	5.6e-33	90	152	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 r+RWtPtp Q++iLe+++++G tP+k++i++it+ L+++G+i+++NV++WFQNr+aR+++kq XP_009777417.1 90 RQRWTPTPMQLQILERIFDQGNGTPSKQKIKEITSDLSQHGQISETNVYNWFQNRRARSKRKQ 152 89***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.997	86	151	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-18	86	156	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-19	88	155	IPR009057	Homeodomain-like
SMART	SM00389	1.1E-14	88	155	IPR001356	Homeobox domain
CDD	cd00086	6.79E-14	90	152	No hit	No description
Pfam	PF00046	2.4E-19	90	150	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEWEKQQQQP PQTAEELGGG GGGGGMFVKV MTDEQMEVLR KQIAVYATIC EQLVDLHKSM 60 ASQHDLAGVR LGNLYCDPLV TSAGHKITGR QRWTPTPMQL QILERIFDQG NGTPSKQKIK 120 EITSDLSQHG QISETNVYNW FQNRRARSKR KQQVATTNNT ESEVETEVES PNEKKTRPED 180 LQSPHMPTSR AEDVGYQNPE VSSGMHSLDP LTSKPEPVFP SEGTSKPAGS YGEMSFYGMS 240 NPRMDQLMGK MEVPGSYHPY LHAEDYNMTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215450	0.0	AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777417.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Refseq	XP_016442227.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	3e-87	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1S3XRB3	0.0	A0A1S3XRB3_TOBAC; WOX13b
TrEMBL	A0A1U7WBQ3	0.0	A0A1U7WBQ3_NICSY; WUSCHEL-related homeobox 8-like
STRING	XP_009777417.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5675	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-82	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]