PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009777707.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 245aa MW: 27301.1 Da PI: 6.7616

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009777707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.8	8.1e-29	4	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C l+p++ p++q++++ +++k++G++ + +l+++ p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++ +q+ XP_009777707.1 4 SCNGCRVLRKGCSENCSLRPCLqwirsPDSQANATVFLAKFYGRAGLFNLINSGPDHLRPAIFRSLLYEACGRIINPVHGSVGLMCSGNWTRCQE 98 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e +l XP_009777707.1 99 AVESVLK 105 9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.02	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-23	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSENCS LRPCLQWIRS PDSQANATVF LAKFYGRAGL FNLINSGPDH 60 LRPAIFRSLL YEACGRIINP VHGSVGLMCS GNWTRCQEAV ESVLKGSTVI QIPINDDNNT 120 DNQVSLQIMP LKGCDIRHIS KNNSTDIHQV VKTRNRFKRK AKVETTASEY MINEPGPLKF 180 SITGWDFDNH MEEEDELKRA PSHDSFSVET VEPSLVNRVE PVLPVKLEED GDVGLELTLG 240 LTSPA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009777707.1	0.0	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	6e-72	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1U7WCJ6	0.0	A0A1U7WCJ6_NICSY; LOB domain-containing protein 40-like
STRING	XP_009777707.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-74	LOB domain-containing protein 41