PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777739.1
Common NameGLOBOSA
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 23161.5 Da    PI: 9.4441
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777739.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien+snrqvt+skRrngilKKA+E+SvLCda+v+viif+s+gk++e+ss
  XP_009777739.1  9 KRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSS 59
                    79***********************************************96 PP
2K-box45.82.7e-1669151196
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     y+k +g++l++ak+e+l++e++k+kk ++n+q e             l+eL+ Le++L+++l++iR+k+n+ll+++ +++q +e+e+++ n +Lr
  XP_009777739.1  69 YHKLTGRRLWDAKHENLDNEINKVKKDNDNMQIE-------------LRELMMLEDALDNGLTSIRNKQNDLLKMMRKKTQSMEEEQDQLNWQLR 150
                     78999999*************************9.............89*********************************************9 PP

           K-box  96 k 96 
                     +
  XP_009777739.1 151 Q 151
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.31161IPR002100Transcription factor, MADS-box
CDDcd002653.95E-42278No hitNo description
SuperFamilySSF554554.19E-36294IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.18368160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGILK KAKEISVLCD ARVSVIIFAS SGKMHEFSST  60
SLVDILDQYH KLTGRRLWDA KHENLDNEIN KVKKDNDNMQ IELRELMMLE DALDNGLTSI  120
RNKQNDLLKM MRKKTQSMEE EQDQLNWQLR QLEIASMNRN MGEIGEVFHQ RENEYQTQMP  180
FAFRVQPMQP NLQERF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-18189183MEF2 CHIMERA
6bz1_B2e-18189183MEF2 CHIMERA
6bz1_C2e-18189183MEF2 CHIMERA
6bz1_D2e-18189183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX679591e-171X67959.1 N.tabacum GLO mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777739.11e-144PREDICTED: floral homeotic protein GLOBOSA isoform X2
SwissprotQ034161e-140GLOB_TOBAC; Floral homeotic protein GLOBOSA
TrEMBLA0A1U7WST31e-142A0A1U7WST3_NICSY; floral homeotic protein GLOBOSA isoform X2
STRINGXP_009777738.11e-139(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-67MIKC_MADS family protein