PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009777956.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 192aa    MW: 21462.3 Da    PI: 7.3436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009777956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51e-1014422755
             AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++r++lg+f+taeeAa+a+++a+  + g
  XP_009777956.1 14 RKRRVWLGTFDTAEEAARAYDQAAILMSG 42
                    35*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.776150IPR001471AP2/ERF domain
SMARTSM003809.7E-16456IPR001471AP2/ERF domain
PfamPF008471.5E-71140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-191250IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-131251IPR016177DNA-binding domain
CDDcd000183.58E-191552No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MYNIRQSALH KYQRKRRVWL GTFDTAEEAA RAYDQAAILM SGRNAKTNFP ITDDSDNKEL  60
KAKDQEFSSI PSPKALSEIL HAKLRKCSKA PSPSLTCLRL DIESSHIGVW QKRAGPSSDS  120
KCVMTVELQK KNNVKNAIEG ELNSSSTSSS KNCGEIVEGI NIRSEMDEEE RVALQMIEEL  180
LNINSPCPTF DI
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-34HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755246e-34HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777956.11e-142PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X2
RefseqXP_016465392.11e-142PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X2
SwissprotQ9XI332e-50WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A1S3ZM081e-140A0A1S3ZM08_TOBAC; ethylene-responsive transcription factor WIN1-like isoform X2
TrEMBLA0A1U7WKZ71e-140A0A1U7WKZ7_NICSY; ethylene-responsive transcription factor WIN1-like isoform X2
STRINGXP_009777955.11e-128(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.17e-42ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]