PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778037.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 230aa MW: 25951.1 Da PI: 10.0997

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102	5.7e-32	72	128	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk +k+rkpylheSRh+hA+rR+Rg+gGrF XP_009778037.1 72 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 128 69*************************9.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.0E-36	70	131	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.039	71	131	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	73	128	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-24	74	96	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	76	96	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-24	105	128	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MQYKQHLKHI TSTTAAIMGE HQKELTGHSA MLTSYPYPDL QYGGMMTYGA PVHPHLFEIH 60 HARMPLPLDM EEEPVYVNAK QYHGILRRRQ IRAKAELEKK AIKARKPYLH ESRHQHAMRR 120 ARGTGGRFLN TKKLNDMDCT TEEPKKYGAT IPTHSGNSSG SGSSDQREKE GYTVQDMHKG 180 RSRSFSTSNG HGSSMYFSEN TGNEQRNGYY GRGSWSLLVS QASRGAAPNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	72	132	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	1e-127	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778037.1	1e-173	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_016443427.1	1e-173	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_016443428.1	1e-173	PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X2
Swissprot	Q945M9	7e-37	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A1S3XU07	1e-172	A0A1S3XU07_TOBAC; nuclear transcription factor Y subunit A-9-like isoform X2
TrEMBL	A0A1S3XUQ6	1e-171	A0A1S3XUQ6_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBL	A0A1U7WDJ1	1e-172	A0A1U7WDJ1_NICSY; nuclear transcription factor Y subunit A-7-like
STRING	XP_009778037.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11232	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	8e-29	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]