PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778516.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1247aa MW: 136401 Da PI: 4.6718

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778516.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	414	435	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +C+ +F+ k++L +H+ +H XP_009778516.1 414 HCDKCNVTFNGKDDLLQHQLSH 435 5******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	9.891	285	358	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	8.5E-8	293	337	IPR016177	DNA-binding domain
Pfam	PF01429	6.5E-5	293	338	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50157	10.076	413	440	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	413	435	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.06E-5	414	479	No hit	No description
PROSITE pattern	PS00028	0	415	435	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.182	457	484	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.32	457	479	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	459	479	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1247 aa Download sequence Send to blast
MASVTVDSSS VTVTDGPLHA ESIPTVDLRL LSQSELFSLS LCSPSAFNPR RDDDVIVPKI 60 DRSVFNESAG SRKQTYSRLR LAPASSAASS SSSALRSRTP HLRNSLHNPS SFNNDPENSQ 120 IVALLKQLFG SGTETNPNPS DLIPIRVDYS DSLSVPVPLT VRVPESSNVG SIGQKRKRGR 180 PRKNENENQN ENVGVGGGGV DKGTNVAIKD IVVYQNVDDN RDRDDKEMLN KDGEPVDLAV 240 LGTLEDPFGE EMRRRTKGLG SSEELLRFLG RLNGQWGSTR KKRRIVDAGE FGNVLPKGWK 300 LLLSIKRKEG RVWLHCRRYI SPSGRQFETC KEVSSYLLFL HGERNENLPT YAKSCGTAEI 360 TNTCALVSTS DLQDVSNNEG PLFHNSSPAV DHGELQVLLN FGELSEVQVG DLLHCDKCNV 420 TFNGKDDLLQ HQLSHRRRRS RNGQSITDGV IIKDGKFECQ FCHKTFEERR RYNGHVGAHV 480 KNQVKTVDGS VSINVGEFVE PVASSGAMLR ESIMQDSVVS LRNVTEIADL SADYGRKFAP 540 SGKIQEEDHM EIDDKLEGLS EALNTAPNKT NMCLSSEAIT CNNMGNIYCE TPCDSLIADV 600 VAEGTNKGCH KQEGNSESCS PISLKEQTCV NTRKVIDSSI IEEPEQEGLL CSTGIVDSCG 660 VSVEDGKFSP AVEESKVEGD RFVDNESSTA LCSNVSVLDE NSLTNAKQVS CTEDHSGKNI 720 DVLNRVPFLA ETSKENRGLS STGTPSCDKE GSAVDYVKRV FHGCIGEQKP SNMMCNIEND 780 ECGSLVDSND NKLIMKEDSC SFVPHPDKHV NTAEKDVSDG SACFLEEPEQ QKGDENGLLS 840 PACDKNGVEA QLLNDSKTTT DEPKVSELQS VSSNIKGFPC NNHAVQKADA SDIEKEKSLA 900 FCSLFPATNL RASCAEDHDT KVYQSTIEVN DQQRAANALF SSTNVPEAST RENTTNRSYN 960 NPLNGSKFDG LENSRHHDLN VVFGNSHVDL DANLNCTTFQ LGMEETYGVQ ANLLGRFESD 1020 KQGEVGIDLS DSAFKGKTGD LESNFNTVFH SQLWDEQKVD EVGDSGKKII TGFGCGDAKP 1080 NEDVMAGSIW RTGVENVMHG DSADNSTSVV QSSNCFQTYD VLSDKVQSLF GENEKYDGNT 1140 GFDGLRSDRT GPVEYSFMST QSLNSLQEEP RALPYDVDIE QGFNTSFWLG KDDVMPNLAG 1200 RNQVMLVCVW CRNEFYQEPN QLGAEAGSIG SMCPTCSGRI SGQFSFL

Sequence ? help Back to Top

Protein Sequence Length: 1247 aa Download sequence Send to blast

MASVTVDSSS VTVTDGPLHA ESIPTVDLRL LSQSELFSLS LCSPSAFNPR RDDDVIVPKI  60
DRSVFNESAG SRKQTYSRLR LAPASSAASS SSSALRSRTP HLRNSLHNPS SFNNDPENSQ  120
IVALLKQLFG SGTETNPNPS DLIPIRVDYS DSLSVPVPLT VRVPESSNVG SIGQKRKRGR  180
PRKNENENQN ENVGVGGGGV DKGTNVAIKD IVVYQNVDDN RDRDDKEMLN KDGEPVDLAV  240
LGTLEDPFGE EMRRRTKGLG SSEELLRFLG RLNGQWGSTR KKRRIVDAGE FGNVLPKGWK  300
LLLSIKRKEG RVWLHCRRYI SPSGRQFETC KEVSSYLLFL HGERNENLPT YAKSCGTAEI  360
TNTCALVSTS DLQDVSNNEG PLFHNSSPAV DHGELQVLLN FGELSEVQVG DLLHCDKCNV  420
TFNGKDDLLQ HQLSHRRRRS RNGQSITDGV IIKDGKFECQ FCHKTFEERR RYNGHVGAHV  480
KNQVKTVDGS VSINVGEFVE PVASSGAMLR ESIMQDSVVS LRNVTEIADL SADYGRKFAP  540
SGKIQEEDHM EIDDKLEGLS EALNTAPNKT NMCLSSEAIT CNNMGNIYCE TPCDSLIADV  600
VAEGTNKGCH KQEGNSESCS PISLKEQTCV NTRKVIDSSI IEEPEQEGLL CSTGIVDSCG  660
VSVEDGKFSP AVEESKVEGD RFVDNESSTA LCSNVSVLDE NSLTNAKQVS CTEDHSGKNI  720
DVLNRVPFLA ETSKENRGLS STGTPSCDKE GSAVDYVKRV FHGCIGEQKP SNMMCNIEND  780
ECGSLVDSND NKLIMKEDSC SFVPHPDKHV NTAEKDVSDG SACFLEEPEQ QKGDENGLLS  840
PACDKNGVEA QLLNDSKTTT DEPKVSELQS VSSNIKGFPC NNHAVQKADA SDIEKEKSLA  900
FCSLFPATNL RASCAEDHDT KVYQSTIEVN DQQRAANALF SSTNVPEAST RENTTNRSYN  960
NPLNGSKFDG LENSRHHDLN VVFGNSHVDL DANLNCTTFQ LGMEETYGVQ ANLLGRFESD  1020
KQGEVGIDLS DSAFKGKTGD LESNFNTVFH SQLWDEQKVD EVGDSGKKII TGFGCGDAKP  1080
NEDVMAGSIW RTGVENVMHG DSADNSTSVV QSSNCFQTYD VLSDKVQSLF GENEKYDGNT  1140
GFDGLRSDRT GPVEYSFMST QSLNSLQEEP RALPYDVDIE QGFNTSFWLG KDDVMPNLAG  1200
RNQVMLVCVW CRNEFYQEPN QLGAEAGSIG SMCPTCSGRI SGQFSFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778516.1	0.0	PREDICTED: uncharacterized protein LOC104227857
TrEMBL	A0A1U7WMK7	0.0	A0A1U7WMK7_NICSY; uncharacterized protein LOC104227857
STRING	XP_009778516.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19