PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778656.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 164aa MW: 19284.7 Da PI: 6.9316

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.9	2.5e-14	79	132	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L ++l++ ++++++ XP_009778656.1 79 RKQRRMISNRESARRSRMRKQKHLDELWAQVICLRNENHQLL---NKLNDASESHDQ 132 689*************************************99...666666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-14	75	139	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.358	77	140	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.6E-12	79	137	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-12	79	152	No hit	No description
SuperFamily	SSF57959	1.31E-12	79	127	No hit	No description
CDD	cd14702	5.99E-20	80	131	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MQPTDVTELY FPSQLIPNYT NYTATFQSNI RISSPLYDLR IGPPLQELNP RTNNNYFNCH 60 YSTCDETDDQ QLLTLINERK QRRMISNRES ARRSRMRKQK HLDELWAQVI CLRNENHQLL 120 NKLNDASESH DQALQENAQL KEETSALRQM VTNMQLMNSV IILA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	98	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778656.1	1e-119	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-33	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A1U7WMZ1	1e-117	A0A1U7WMZ1_NICSY; basic leucine zipper 43-like
STRING	XP_009778656.1	1e-118	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	5e-44	basic leucine-zipper 42

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]