PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778708.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 304aa MW: 34913.4 Da PI: 4.7703

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778708.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.3	2.4e-26	134	183	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++skyF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk+ sl XP_009778708.1 134 RMLSRETISKYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLMSL 183 57899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.518	118	204	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-21	136	183	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSTNQENHQD VFSLPIQLPS LEFSGYSGHH AIDYQYDLSI QEFDANPFME FTLDDPLYSS 60 FYSTPLQCLT PAAGELYYGD LGNGFGLSDE LGSGNNQLLL CDKNQEIIIT NDHVEEIKKR 120 EKDSRQIEEI NSTRMLSRET ISKYFYMPIT QAAKELNIGL TLLKKRCREL GIRRWPHRKL 180 MSLQTLIKNV KELEKGGGSG MEQKLKDVIK LLEEEKKMLE EVPDMELEEK TKRLRQACFK 240 ANYKRRKLMS MTELQASFGS YCNSNPAVGI GYGHREEEDD DYDDEEIKSL LADCFSSSSP 300 TLHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778708.1	0.0	PREDICTED: protein RKD1
Swissprot	Q9M9U9	3e-54	RKD1_ARATH; Protein RKD1
TrEMBL	A0A1U7WJ79	0.0	A0A1U7WJ79_NICSY; protein RKD1
STRING	XP_009778708.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-51	RWP-RK domain-containing protein