PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778719.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 311aa    MW: 35396.4 Da    PI: 8.7409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.3e-11133179455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h++ E+rRR+ri ++   L el+P++      K   a++L +A++YI+ Lq
  XP_009778719.1 133 MHKMSEKRRRQRIAKRVKVLEELIPNC-----NKSGRASVLDQAIQYIQTLQ 179
                     7*************************8.....4666678************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-15128188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.80E-10132183No hitNo description
PfamPF000101.8E-8133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15133187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-10135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MSDQISKWDL SFPSSAYEDA CKKITLSHLK VEDEVSQTNF LDNNSPPTLL TLGIPGMENH  60
ELMIDLQQSQ QQGKKTRSSP CHESLDRKSR GLKRKCGENI EHLVPEFDAN ESGRTSRRNE  120
DGLQPSRASF VKMHKMSEKR RRQRIAKRVK VLEELIPNCN KSGRASVLDQ AIQYIQTLQH  180
QVQVMSMDGF PASNLLARNL MMQSNNNNIP NVISQMMQST LQFNPHVLVM RRVAAGSFFG  240
LGTSMMSPHF AASYWSLPHA AIVNLLPLMP GMELLRQQND FHSSLPYRRF FPCDINREDS  300
DMEQSSSINL F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778719.10.0PREDICTED: transcription factor PIF5-like
TrEMBLA0A1U7WVL10.0A0A1U7WVL1_NICSY; transcription factor PIF5-like
STRINGXP_009778719.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2352422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-18phytochrome interacting factor 3