PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778768.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 67aa MW: 7559.91 Da PI: 10.5468

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80	1.6e-25	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie+ks rqvt++kRr+g++KKA+ LS+LCd++vav++fs +g+lye XP_009778768.1 9 KRIEEKSSRQVTLCKRRKGLIKKAKQLSILCDVDVAVVVFSDRGTLYES 57 79*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.712	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.4E-32	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-25	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-23	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-23	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MGRKKVEMKR IEEKSSRQVT LCKRRKGLIK KAKQLSILCD VDVAVVVFSD RGTLYESSTP 60 SRDVSCA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269\|PubMed:10765981}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778768.1	7e-41	PREDICTED: MADS-box transcription factor 21-like isoform X1
Swissprot	Q6R4R9	8e-21	CALA_BRAOB; Truncated transcription factor CAULIFLOWER A
TrEMBL	A0A1U7WJD7	2e-39	A0A1U7WJD7_NICSY; MADS-box transcription factor 21-like isoform X1
STRING	XP_009778768.1	3e-40	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	1e-23	MIKC_MADS family protein

Publications ? help Back to Top
Li XF,Shen RJ,Liu PL,Tang ZC,He YK Molecular characters and morphological genetics of CAL gene in Chinese cabbage. Cell Res., 2000. 10(1): p. 29-38 [PMID:10765981]