PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778880.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 199aa    MW: 22733.2 Da    PI: 4.3696
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778880.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-0915372346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     +W++Ia+ ++ gRt++++k++w++
   XP_009778880.1 15 RWAKIAEQLP-GRTDNEVKNYWRT 37
                     4*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.437143IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-101438IPR009057Homeodomain-like
CDDcd001676.58E-71437No hitNo description
SuperFamilySSF466893.43E-71548IPR009057Homeodomain-like
PfamPF002493.7E-71537IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MCIYTTLNIY LLIKRWAKIA EQLPGRTDNE VKNYWRTKVQ KHAKQLHCDV NSLQFRDFLY  60
YQWLPRLTEQ IRSTSSPQEQ LMSSSSSTSH NNSTEVILEN FTFLQAGINE STNITCPINQ  120
STPNVAQVTS LIDDNIWNLS SGNWTSSGFE DEFYDLSSTD MAIYSNSQDQ CHSWASAGSE  180
VLLPDETLGL SDVDLWLFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778880.11e-147PREDICTED: transcription factor MYB24-like
TrEMBLA0A1U7WXB61e-145A0A1U7WXB6_NICSY; transcription factor MYB24-like
STRINGXP_009778880.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-26myb domain protein 78