PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009778963.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 530aa    MW: 60003.7 Da    PI: 5.8185
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009778963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.1e-131382111899
                     --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +pkkf+++h  +k  + t++l de+ +++  k+ ++k++    l++GW++F  a+ L  gD+++F+l++  +f  +v ++r+
  XP_009778963.1 138 FPKKFCDRHL-PK-HDDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLLHGDVLIFQLIQPCKF--KVYIIRE 211
                     7********4.33.3459***************888888....*************************98888..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1683102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-1987210No hitNo description
SMARTSM010195.2E-12127212IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-16136211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-16137212IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-10137211IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292138212IPR003340B3 DNA binding domain
PfamPF052661.4E-9408510IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAISAMYSSK KSPLLSSFKK KALEIKKKLL RKRVLGPSQT YKRENGDNKK VQLCHEKKAN  60
KPSTVDANSS AMLRAEEVQA NLPSQFPSFA KFMLPSHVTG GFWLVLISFL HAYMYLSLSL  120
FLDPRVYRKQ PLSLHKGFPK KFCDRHLPKH DDTVVLVDED EQEYATKYLV DKTGLSGGWR  180
GFSIAHSLLH GDVLIFQLIQ PCKFKVYIIR ESTLTELDGA ISLLNLDFHA RPIESDQIED  240
MKICEAKELR YLEPPVLDTH QDDKQEIDGA ISLLKLDFRA RPIKSDQDEG MNICEAKEEK  300
YLEPSVIDID QDDENEEAIL VQNLDQGAAS DQCGNDNDIS SEVLGIRFSE SRLEFKDVKD  360
FSGFNILVDG LIVDSEIPAH IRNKYYDLCC TQKSFLHDHL LSGLNCKLAA GMITETVNIA  420
DAIRASNIST SRDYLEAWDN TLKGFECLGM EVGFLRARLN KLVSLSSEPQ QILESKRNEL  480
VEAKEEMRNL ETKLLKVKQV IKNLDSEIDL TTKDASFELK FKAVAAAPWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778963.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1U7WK790.0A0A1U7WK79_NICSY; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGXP_009778963.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-34B3 family protein