PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778964.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 498aa MW: 56172.1 Da PI: 5.2365

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.5	3.9e-16	89	179	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k ++ps+v+ +l +pkkf+++h +k + t++l de+ +++ k+ ++k++ l++GW++F a+ L gD+++F+l++ +f +v XP_009778964.1 89 FAKFMLPSHVTGGFWLGFPKKFCDRHL-PK-HDDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLLHGDVLIFQLIQPCKF--KVY 175 8899********************4.33.3459***********888888....***********************98888..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_009778964.1 176 IIRE 179 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-19	83	180	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.04E-22	83	179	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.82E-25	87	178	No hit	No description
PROSITE profile	PS50863	11.914	89	180	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-20	89	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-14	89	179	IPR003340	B3 DNA binding domain
Pfam	PF05266	1.3E-9	376	478	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MAISAMYSSK KSPLLSSFKK KALEIKKKLL RKRVLGPSQT YKRENGDNKK VQLCHEKKAN 60 KPSTVDANSS AMLRAEEVQA NLPSQFPSFA KFMLPSHVTG GFWLGFPKKF CDRHLPKHDD 120 TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLLHGD VLIFQLIQPC KFKVYIIRES 180 TLTELDGAIS LLNLDFHARP IESDQIEDMK ICEAKELRYL EPPVLDTHQD DKQEIDGAIS 240 LLKLDFRARP IKSDQDEGMN ICEAKEEKYL EPSVIDIDQD DENEEAILVQ NLDQGAASDQ 300 CGNDNDISSE VLGIRFSESR LEFKDVKDFS GFNILVDGLI VDSEIPAHIR NKYYDLCCTQ 360 KSFLHDHLLS GLNCKLAAGM ITETVNIADA IRASNISTSR DYLEAWDNTL KGFECLGMEV 420 GFLRARLNKL VSLSSEPQQI LESKRNELVE AKEEMRNLET KLLKVKQVIK NLDSEIDLTT 480 KDASFELKFK AVAAAPWS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MAISAMYSSK KSPLLSSFKK KALEIKKKLL RKRVLGPSQT YKRENGDNKK VQLCHEKKAN  60
KPSTVDANSS AMLRAEEVQA NLPSQFPSFA KFMLPSHVTG GFWLGFPKKF CDRHLPKHDD  120
TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLLHGD VLIFQLIQPC KFKVYIIRES  180
TLTELDGAIS LLNLDFHARP IESDQIEDMK ICEAKELRYL EPPVLDTHQD DKQEIDGAIS  240
LLKLDFRARP IKSDQDEGMN ICEAKEEKYL EPSVIDIDQD DENEEAILVQ NLDQGAASDQ  300
CGNDNDISSE VLGIRFSESR LEFKDVKDFS GFNILVDGLI VDSEIPAHIR NKYYDLCCTQ  360
KSFLHDHLLS GLNCKLAAGM ITETVNIADA IRASNISTSR DYLEAWDNTL KGFECLGMEV  420
GFLRARLNKL VSLSSEPQQI LESKRNELVE AKEEMRNLET KLLKVKQVIK NLDSEIDLTT  480
KDASFELKFK AVAAAPWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778964.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A1U7WWA4	0.0	A0A1U7WWA4_NICSY; B3 domain-containing protein Os01g0234100-like isoform X2
STRING	XP_009778963.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-40	B3 family protein