PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778965.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 459aa MW: 52085.4 Da PI: 4.694

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.5	4.9e-13	67	140	18	99
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pkkf+++h +k + t++l de+ +++ k+ ++k++ l++GW++F a+ L gD+++F+l++ +f +v ++r+ XP_009778965.1 67 FPKKFCDRHL-PK-HDDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLLHGDVLIFQLIQPCKF--KVYIIRE 140 7******4.33.3459***********888888....***********************98888..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-16	12	31	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.18E-20	16	139	No hit	No description
SMART	SM01019	5.2E-12	56	141	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	3.34E-16	65	140	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.3E-10	66	140	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-16	66	141	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.292	67	141	IPR003340	B3 DNA binding domain
Pfam	PF05266	1.1E-9	337	439	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MLRAEEVQAN LPSQFPSFAK FMLPSHVTGG FWLVLISFLH AYMYLSLSLF LDPRVYRKQP 60 LSLHKGFPKK FCDRHLPKHD DTVVLVDEDE QEYATKYLVD KTGLSGGWRG FSIAHSLLHG 120 DVLIFQLIQP CKFKVYIIRE STLTELDGAI SLLNLDFHAR PIESDQIEDM KICEAKELRY 180 LEPPVLDTHQ DDKQEIDGAI SLLKLDFRAR PIKSDQDEGM NICEAKEEKY LEPSVIDIDQ 240 DDENEEAILV QNLDQGAASD QCGNDNDISS EVLGIRFSES RLEFKDVKDF SGFNILVDGL 300 IVDSEIPAHI RNKYYDLCCT QKSFLHDHLL SGLNCKLAAG MITETVNIAD AIRASNISTS 360 RDYLEAWDNT LKGFECLGME VGFLRARLNK LVSLSSEPQQ ILESKRNELV EAKEEMRNLE 420 TKLLKVKQVI KNLDSEIDLT TKDASFELKF KAVAAAPWS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MLRAEEVQAN LPSQFPSFAK FMLPSHVTGG FWLVLISFLH AYMYLSLSLF LDPRVYRKQP  60
LSLHKGFPKK FCDRHLPKHD DTVVLVDEDE QEYATKYLVD KTGLSGGWRG FSIAHSLLHG  120
DVLIFQLIQP CKFKVYIIRE STLTELDGAI SLLNLDFHAR PIESDQIEDM KICEAKELRY  180
LEPPVLDTHQ DDKQEIDGAI SLLKLDFRAR PIKSDQDEGM NICEAKEEKY LEPSVIDIDQ  240
DDENEEAILV QNLDQGAASD QCGNDNDISS EVLGIRFSES RLEFKDVKDF SGFNILVDGL  300
IVDSEIPAHI RNKYYDLCCT QKSFLHDHLL SGLNCKLAAG MITETVNIAD AIRASNISTS  360
RDYLEAWDNT LKGFECLGME VGFLRARLNK LVSLSSEPQQ ILESKRNELV EAKEEMRNLE  420
TKLLKVKQVI KNLDSEIDLT TKDASFELKF KAVAAAPWS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778963.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A1U7WK79	0.0	A0A1U7WK79_NICSY; B3 domain-containing protein Os01g0234100-like isoform X1
STRING	XP_009778963.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-34	B3 family protein