PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009778971.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 248aa MW: 28809.9 Da PI: 10.2585

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009778971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.3	1.9e-15	64	153	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f k +++s+v++ +l+lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a++L egD++ F+l + + l+v XP_009778971.1 64 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLGFQLFRFCK--LKVY 150 89*******************8884..35678************555555....9********************865344..4777 PP EE- CS B3 96 vfr 98 ++r XP_009778971.1 151 IVR 153 766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-18	56	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-21	57	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-22	62	153	No hit	No description
Pfam	PF02362	1.2E-13	64	154	IPR003340	B3 DNA binding domain
SMART	SM01019	6.6E-18	64	155	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.575	64	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MKDMSLRLQG THKQVFCKKP KKRRSCKNKM AMMQNLYGRF DLASSAKYRA EEVQSRLSTK 60 YPSFMKPMIR SNVTAGFWLS LPRFFCQLHL PRHDTTVTLV DESQEEYKTK YLAERNGLSG 120 GWRGFSLAHN LVEGDVLGFQ LFRFCKLKVY IVRANYLAEV DAALVLLHLD AHQKQANPEQ 180 CTKCRIIEVR NKVESSVKDF PHNEKRMIIL QKKTCYTNIV IQGICSRILT CLQKLQDLPT 240 KILALWML

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778971.1	0.0	PREDICTED: B3 domain-containing protein At5g42700-like isoform X4
Swissprot	Q1G3M3	9e-41	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1U7WNU3	0.0	A0A1U7WNU3_NICSY; B3 domain-containing protein At5g42700-like isoform X4
STRING	XP_009778967.1	1e-131	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-42	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]