PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779065.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 118aa    MW: 13581.2 Da    PI: 9.1463
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-0734562346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      W++Ia++++  Rt +++k++w++
   XP_009779065.1 34 EWSKIAQYLP-ARTYNEIKNYWRT 56
                     5*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.8E-72668IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-93257IPR009057Homeodomain-like
PfamPF002499.7E-63456IPR001005SANT/Myb domain
CDDcd001672.65E-53556No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MEKIQGGQIQ THHIGTKEQL ADQLTKSLCK SQHEWSKIAQ YLPARTYNEI KNYWRTRVQK  60
QARKLKTDSN SAAFQVSTHD SPSLDTSASS EDTRLIICFN TELNRYSALQ DFTFNSII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779065.12e-84PREDICTED: transcription factor MYB21-like
TrEMBLA0A1U7WXV06e-83A0A1U7WXV0_NICSY; transcription factor MYB21-like
STRINGXP_009779065.19e-84(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-17myb domain protein 62