PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009779545.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 234aa MW: 26122 Da PI: 10.1961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009779545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33	1e-10	47	92	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+riN +++L++l P++ +K +K+ +L++Av +k+L XP_009779545.1 47 THAMAERKRRERINAHLHTLKKLFPHL-----PKKDKSRVLTEAVTQLKEL 92 8***********************8.....699********999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-13	34	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.471	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.54E-8	46	97	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.9E-12	47	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-8	47	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.8E-8	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	3.32E-5	140	209	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.6E-6	141	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLSSLQGCNG FLQRANSVQL LHQRNCNMVD EYGKSTRKNK SKDAALTHAM AERKRRERIN 60 AHLHTLKKLF PHLPKKDKSR VLTEAVTQLK ELRKKVAQQM ETQKDSEGNY NGLSSFFLPG 120 ENDEVLLNYH EESDSDERTV KATVCCEDRP GLNRDLSTAV RLVQGRMIKA EMATVGGRTK 180 AEMVVVLCKV GGGEKDIGQL KRALKAVVEN RALGLGSSLN LGRRLGDNKW ACFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	56	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779545.1	1e-173	PREDICTED: putative transcription factor bHLH107 isoform X1
Refseq	XP_016461574.1	1e-173	PREDICTED: putative transcription factor bHLH107
TrEMBL	A0A1S3ZB47	1e-172	A0A1S3ZB47_TOBAC; putative transcription factor bHLH107
TrEMBL	A0A1U7WZA1	1e-172	A0A1U7WZA1_NICSY; putative transcription factor bHLH107 isoform X1
STRING	XP_009779545.1	1e-173	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13713	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	4e-26	bHLH family protein