PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779741.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 600aa    MW: 67144.6 Da    PI: 10.1375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779741.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-1242128597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + ps+vlk  +++++ k a+++ +++ +   l l+ + g sW+v++++ + + + +     WkeFv +n+Lk gD++vF++++ s+  + v++f
  XP_009779741.1  42 MQPSYVLKPYIVSVSLKLARKYFLESYG--NLLLRVPGGGSWSVTHTIgTANAN-V----YWKEFVLDNKLKFGDVCVFEVIKGSKLLMDVTIF 128
                     7899******************888655..6***************65333332.2....3*******************99888887777777 PP
2B345.21.7e-14303394599
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ps+v+k  +l +   fa+++  ++e++  l+l+ +   sW vk+    ++ ++ ++  Wk Fv +n+Lk gD++vF+l++ +e +l +++fr+
  XP_009779741.1 303 MQPSYVSKPYNLHIAFLFARKYF-PEECGNLLVLRVPGRGSWPVKYALGISKTKICFS--WKAFVLDNKLKFGDVCVFELIKGTEPTLDITIFRA 394
                     67999****99***********6.567999****************999999888888..*********************98888899999997 PP
3B348.51.6e-155095891194
                     HHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  11 lks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ++     +l++  + a+++     ++ +++l+ +s +sW vk+i   +     lt+GWkeFv +n+Lk+gD++vF++++r +   ++
  XP_009779741.1 509 SSAsgpMQLSITLSRAKKFFAT--RHSDVVLQVSSKKSWAVKCIL--GTFNAKLTSGWKEFVLDNNLKVGDVCVFEMVSRAKL--LF 589
                     3224447899999999999655..4558***************65..333345***********************8775444..43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1530129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-1531128IPR015300DNA-binding pseudobarrel domain
CDDcd100172.74E-1336129No hitNo description
PROSITE profilePS508639.41838131IPR003340B3 DNA binding domain
SMARTSM010191.4E-738131IPR003340B3 DNA binding domain
PfamPF023621.3E-841128IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-18291395IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-18292394IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-12298395IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223299395IPR003340B3 DNA binding domain
PfamPF023626.3E-12303394IPR003340B3 DNA binding domain
CDDcd100176.22E-17303393No hitNo description
Gene3DG3DSA:2.40.330.103.0E-21491595IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-18492595IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-14497594No hitNo description
PROSITE profilePS5086312.605502597IPR003340B3 DNA binding domain
SMARTSM010197.9E-6502597IPR003340B3 DNA binding domain
PfamPF023621.9E-13510590IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MHKQQSKSVC DLNKTVMDKE RAIAYQRAIA FKSKNPFIIA FMQPSYVLKP YIVSVSLKLA  60
RKYFLESYGN LLLRVPGGGS WSVTHTIGTA NANVYWKEFV LDNKLKFGDV CVFEVIKGSK  120
LLMDVTIFPA AGSTPMHKIA REEPGVCDCK NKINNTDNFV PCSQSKIVQT KKLKQQRGGS  180
YGSGSNSKEE HGEGTGIEHS VEILGHYPLG KSSKTKGPEE EIEDDVSIDI HTKSIKVENT  240
QEHVASPSFT RKTKRSGESC RMHKQQSKGV YAKNKTVLDK ERSIAYQRAK AFKSENPFVI  300
YFMQPSYVSK PYNLHIAFLF ARKYFPEECG NLLVLRVPGR GSWPVKYALG ISKTKICFSW  360
KAFVLDNKLK FGDVCVFELI KGTEPTLDIT IFRATESKAI HKIDGKLAGV SDSKNKIIKT  420
ENSVPCSQSK IVRNRKLNLE KKKKGDSDGF TSKIKEELSE DTRKHVQQSK SSCNGSAVAK  480
EIVLAYQRAK AYTSENPFFI CFIQPSYVSS ASGPMQLSIT LSRAKKFFAT RHSDVVLQVS  540
SKKSWAVKCI LGTFNAKLTS GWKEFVLDNN LKVGDVCVFE MVSRAKLLFN VIIFTSAEGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1527259818144B3 domain-containing transcription factor VRN1
4i1k_B8e-1527259818144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754419e-48HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755149e-48HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779741.10.0PREDICTED: B3 domain-containing protein Os03g0619600-like
TrEMBLA0A1U7WR080.0A0A1U7WR08_NICSY; B3 domain-containing protein Os03g0619600-like
STRINGXP_009779741.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-16related to vernalization1 1