PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779987.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 245aa    MW: 28208.5 Da    PI: 7.9904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779987.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT++Ed +l+ +v ++G  +W+  ++  g+ R++k+c++rw++yl
   XP_009779987.1 14 KGTWTPDEDRKLAAYVSKYGCWNWRQLPKFAGLARCGKSCRLRWLNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding54.33.1e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eEde++ +++++ G++ W+ Ia++++ gR+++++k++w++
   XP_009779987.1  67 RGNYTKEEDEIIMKLHAEIGNK-WSVIAAHLP-GRSDNDIKNHWHT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.729961IPR017930Myb domain
SuperFamilySSF466893.46E-3011108IPR009057Homeodomain-like
SMARTSM007172.8E-91363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-231568IPR009057Homeodomain-like
CDDcd001676.70E-91661No hitNo description
PROSITE profilePS5129425.08562116IPR017930Myb domain
SMARTSM007176.5E-1666114IPR001005SANT/Myb domain
PfamPF002499.2E-1667110IPR001005SANT/Myb domain
CDDcd001677.18E-1169112No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MARTRCYDKS GLKKGTWTPD EDRKLAAYVS KYGCWNWRQL PKFAGLARCG KSCRLRWLNY  60
LQPNIKRGNY TKEEDEIIMK LHAEIGNKWS VIAAHLPGRS DNDIKNHWHT SLKKRSTREY  120
STSTDSIKRS SNNSYQANSQ KKRRENETQL NANESFQLSP MQSCSTEVSS CATIDQNVEN  180
IHGEREVFQE EIFEVSSGSF WTEPFLVDSF NTASDCFVPS FDDHGVFVSP FSPVMSYGEL  240
LCSYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-28121155107B-MYB
1h8a_C2e-271211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779987.10.0PREDICTED: myb-related protein Myb4-like
RefseqXP_016433966.10.0PREDICTED: myb-related protein Myb4-like isoform X1
TrEMBLA0A1S3X2C00.0A0A1S3X2C0_TOBAC; myb-related protein Myb4-like isoform X1
TrEMBLA0A1U7WJ830.0A0A1U7WJ83_NICSY; myb-related protein Myb4-like
STRINGXP_009779987.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-54myb domain protein 15