PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009780129.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 210aa MW: 23767.9 Da PI: 8.8281

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009780129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.3	3e-21	15	62	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n++n qvtfskR+ng++KKA+EL++L +aeva++ fs+ +k+y + XP_009780129.1 15 KIQNERNLQVTFSKRQNGLFKKASELCTLSGAEVALVGFSPGNKVYSF 62 599*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.175	6	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-27	6	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-25	7	80	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.10E-31	7	79	No hit	No description
PRINTS	PR00404	6.6E-17	8	28	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.8E-23	15	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-17	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.6E-17	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGRKSNGRKK VDMVKIQNER NLQVTFSKRQ NGLFKKASEL CTLSGAEVAL VGFSPGNKVY 60 SFGHPSVDLV IDRFLTENSQ PNIDVPNHLI EAHRNANVRE INMDELIDKV GTLEMERNRG 120 KALQRTWRDA TPDERWWKAP IENLNFFQLR EVAEAMEMTK KQCEIEAEHQ QKVHGIAFPY 180 RTLGSALAPY GGARESSSNG SYARPSEFCG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1c7u_A	2e-16	7	82	1	75	MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B	2e-16	7	82	1	75	MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780129.1	1e-158	PREDICTED: agamous-like MADS-box protein AGL62
Refseq	XP_016436587.1	1e-158	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1S3X9K3	1e-157	A0A1S3X9K3_TOBAC; agamous-like MADS-box protein AGL62
TrEMBL	A0A1U7WZS5	1e-157	A0A1U7WZS5_NICSY; agamous-like MADS-box protein AGL62
STRING	XP_009780129.1	1e-158	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-45	AGAMOUS-like 62