PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780426.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 254aa    MW: 29304.4 Da    PI: 10.4338
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.9e-121662361688
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.S CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.s 88 
                     +++p +fa+  g++k +  ++tl + +g++W+v +  +  + r+++++GW  F  +n++   g+++ Fkl++  +
  XP_009780426.1 166 VTIPMTFARWSGIIKMK--KITLINGEGKKWKVDI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQGrR 236
                     69******999999655..8***************..999999****************989*******996424 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-6582IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-6683IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.82422107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-13148235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-13148234IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.784151252IPR003340B3 DNA binding domain
SMARTSM010190.0031154242IPR003340B3 DNA binding domain
PfamPF023622.2E-9166234IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLVDPDKYPS FCKLLFRQGF MDKILMPPVF IKENKKKLAK TCLLKTDIAA GMSWEAKIVK  60
ENSHFFICDG EWPKFVAHHK LKRQLFEELS SSSEEEEECD VGIRLSRKSK KVKTEPKELP  120
GVAEEEEAQN RSKENGPKTL RYSVVNLKNK NPYYEMAVRK THSLFVTIPM TFARWSGIIK  180
MKKITLINGE GKKWKVDIEH IGPRVLIKGG WAAFRTQNKI AANGETCRFK LIQGRRRGRG  240
RSCYVLQVEK ISKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780426.10.0PREDICTED: uncharacterized protein LOC104229470 isoform X2
TrEMBLA0A1U7WSZ10.0A0A1U7WSZ1_NICSY; uncharacterized protein LOC104229470 isoform X2
STRINGXP_009780425.11e-164(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.14e-10B3 family protein