PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780503.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 178aa    MW: 19923.6 Da    PI: 9.2414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-173179355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +kG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  XP_009780503.1 31 FKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 79
                    8****999.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-203088IPR016177DNA-binding domain
PROSITE profilePS5103221.5493087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-293088IPR001471AP2/ERF domain
CDDcd000187.00E-263089No hitNo description
SMARTSM003802.0E-363093IPR001471AP2/ERF domain
PfamPF008472.1E-103179IPR001471AP2/ERF domain
PRINTSPR003671.1E-103142IPR001471AP2/ERF domain
PRINTSPR003671.1E-106989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEVDGGRSGG AAVVGGEGWC CPGKIKKERI FKGIRMRKWG KWVAEIREPN KRSRIWLGSY  60
STPVAAARAY DTAVYYLRGP SARLNFPELL VGDGGLSDLS AASIRKKAVE VGARVDAIQN  120
SLAIHKHHGH HHDQQRPRES RNHCCENGSP AQLKPCWFQE KPDLNVKPEP EDPELEYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1431941580Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780503.11e-130PREDICTED: ethylene-responsive transcription factor ERF011-like
RefseqXP_016462719.11e-130PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH943e-50ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1S3ZEE01e-129A0A1S3ZEE0_TOBAC; ethylene-responsive transcription factor ERF011-like
TrEMBLA0A1U7WPL01e-129A0A1U7WPL0_NICSY; ethylene-responsive transcription factor ERF011-like
STRINGXP_009780503.11e-130(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.14e-45DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]