PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780707.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 236aa    MW: 26668.8 Da    PI: 4.863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.67.8e-12125207384
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     k l +sd  +   l+l +k++++ + + + + ++tl+d+sg   ++W++ +   k+  + +l++GW e++  ++L+ gD+v+++ 
  XP_009780707.1 125 KNLRHSDLKRMEGLRLLRKYLDKLKTPLQAPADITLTDQSGeekKEWKMSV--VKTNLGLYLREGWFEYAAKHKLEIGDTVIIEA 207
                     678889999999*********999777778899******************..999999***********************994 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-13114207IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925123221IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-11123212IPR015300DNA-binding pseudobarrel domain
CDDcd100174.94E-11125206No hitNo description
PfamPF023621.7E-9125207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MADEKSDAPD AVHTNNTLGN LTANEIVAEK EADAGKSVVK EKSTQDHNNK TVAEKEADAG  60
KAVIEEKNTQ DHNNEIVADA GKSEVEADQE SDDSYYGHID VYDFFVDEVP EIESSNINVE  120
TVLRKNLRHS DLKRMEGLRL LRKYLDKLKT PLQAPADITL TDQSGEEKKE WKMSVVKTNL  180
GLYLREGWFE YAAKHKLEIG DTVIIEALNV PEIKYEIRFD KNVKRPKKPN KAKTEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780707.11e-172PREDICTED: uncharacterized protein LOC104229717
TrEMBLA0A1U7WL601e-170A0A1U7WL60_NICSY; uncharacterized protein LOC104229717
STRINGXP_009780707.11e-171(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1821933