PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009780863.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 756aa    MW: 87324.6 Da    PI: 5.9906
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009780863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.9e-1663113255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++  g++v+e+ dp+   k kr++lg+f+ta eAa a+++a++kl+g
  XP_009780863.1  63 RYRGIRQRP-GGKFVSEVSDPTR--KGKRVWLGTFDTATEAAMAYDRAALKLRG 113
                     8********.9******888643..34*************************98 PP
2RWP-RK55.21.4e-17577624552
          RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     i+ e l+++F +++ dAAk+L v+ ++LKr CR+y+I+RWPh k +++
  XP_009780863.1 577 ITREILEQHFGKTLVDAAKTLRVSRSTLKRVCREYNISRWPHHKTRKV 624
                     8999****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-2762121No hitNo description
PROSITE profilePS5103222.33963121IPR001471AP2/ERF domain
PfamPF008472.7E-1163113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2863122IPR001471AP2/ERF domain
SMARTSM003809.0E-3363127IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2063122IPR016177DNA-binding domain
PRINTSPR003676.3E-86475IPR001471AP2/ERF domain
PRINTSPR003676.3E-887103IPR001471AP2/ERF domain
PfamPF124369.4E-17123196IPR024729Ubiquitin carboxyl-terminal hydrolase 7, ICP0-binding domain
PfamPF145334.1E-57206416IPR029346Ubiquitin carboxyl-terminal hydrolase, C-terminal
PROSITE profilePS5151912.98561647IPR003035RWP-RK domain
PfamPF020423.9E-18577624IPR003035RWP-RK domain
SuperFamilySSF542771.21E-17667754No hitNo description
SMARTSM006661.4E-14671753IPR000270PB1 domain
PROSITE profilePS5174519.453671753IPR000270PB1 domain
PfamPF005641.1E-14672752IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.1E-16673751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MASLQQSTLD LITQLLLDDD AFLVSYGSSE TNTSFDSKTE LNRFKFEGKT EDSVQKMEDT  60
LKRYRGIRQR PGGKFVSEVS DPTRKGKRVW LGTFDTATEA AMAYDRAALK LRGSRAILNF  120
PQKLVHFRAL EKPKEEDFCL ELAKSDTYDD VVERVAQRLG VDDPSKIRLT PHNYYSQQPK  180
PNPIKYRSVD HLVDMLIHDN QISDILYYEV LDIPLPELQC LKTFKVDFHH SKKDEVEILN  240
VRLPKQSTVG DFLNGIKSKV ELSHPNAELR LLEIFYHKIF KIFPLTEKFE NINDQYWTLR  300
AEEIPEEEKN LGPHDRLIHV YHFTKETPQN QMPVQNFGEP FFLVIHECET LAEIKVRIQK  360
KLQVPDEEFS KWKFAFLSLG HPEYLQDTDI VSSRFQRRYV YDAWEQYLGL EHADNTSRRP  420
YVSQEMEFRL SEINDIFYSK DNDSQRSENN VTTSLLVPSC SSHRPDLFNN EGIEQVDLLL  480
PHATEATVMN RGSMVNVNVA HDRCNDGGEI VQPNLLCEKS NVEIYSSSND KVEHNDIARG  540
SSSCERLLVE ADAMTNIQNI DSKNKCTIAR LEKDYGITRE ILEQHFGKTL VDAAKTLRVS  600
RSTLKRVCRE YNISRWPHHK TRKVYRRVSQ GVSLQSAEQY VEDTQQCPDL SHEKGTDLLA  660
PAATEKPCDN LMTLKVTYRG DIIKFQLSPS ATRVELEVEV EKRFNISLQR CSIKYQDDDD  720
DWILITSNSD LRDGMNSLRL LGRTTMKLLV TPISET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2562124163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2562124466ATERF1
3gcc_A2e-2562124466ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780863.10.0PREDICTED: uncharacterized protein LOC104229842
TrEMBLA0A1U7WQK30.0A0A1U7WQK3_NICSY; uncharacterized protein LOC104229842
STRINGXP_009780863.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1571547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-26ethylene responsive element binding factor 5