PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781263.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 130aa    MW: 15394.3 Da    PI: 5.2589
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-1027107189
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+ v +++++ + + +++p++   +h  ++  ++++ l + ++++W v +  + +++r  +++GWk+F  +n +k g +v F+l++ s+
  XP_009781263.1  27 FE-VVMTESYINYDDMYIPRNIY-KHL-PP--TVEIALFHYRSKEWFVSM--SVGDRR-RFKEGWKRFILDNYVKRGFVVKFTLVDVSS 107
                     44.455667777777*******9.663.32..468***************..555444.4899********************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-1321110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-1323110IPR015300DNA-binding pseudobarrel domain
CDDcd100178.24E-925110No hitNo description
PROSITE profilePS508639.91126116IPR003340B3 DNA binding domain
SMARTSM010191.0E-727116IPR003340B3 DNA binding domain
PfamPF023623.8E-927108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDASHSTKRC LTYSCTSEDE EENPPTFEVV MTESYINYDD MYIPRNIYKH LPPTVEIALF  60
HYRSKEWFVS MSVGDRRRFK EGWKRFILDN YVKRGFVVKF TLVDVSSLYV DFNVEVKGEG  120
THDRNSVEID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781263.12e-93PREDICTED: uncharacterized protein LOC104230220 isoform X1
TrEMBLA0A1U7WRQ15e-92A0A1U7WRQ1_NICSY; uncharacterized protein LOC104230220 isoform X1
STRINGXP_009781263.19e-93(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.18e-07B3 family protein