PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781562.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 936aa    MW: 104925 Da    PI: 6.5771
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.75.4e-54131273116
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e + rwlk+ e++ iL n+e+h+l++e++++p+sgsl+L+n++++r+frkDG+sw+kkkdg+tv E+he+LKvg+ e+l+cyYah+e+np+fqr
  XP_009781562.1  13 REaQIRWLKPAEVLFILRNHEHHQLSNEPAQKPPSGSLFLFNKRVLRFFRKDGHSWRKKKDGRTVGEAHERLKVGNAEALNCYYAHGEQNPNFQR 107
                     55589****************************************************************************************** PP

            CG-1  97 rcywlLeeelekivlvhyle 116
                     r+yw+L+  +e+ivlvhy++
  XP_009781562.1 108 RSYWMLDPVYEHIVLVHYRD 127
                     ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.5528134IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7411129IPR005559CG-1 DNA-binding domain
PfamPF038592.6E-4714127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.7E-10391479IPR013783Immunoglobulin-like fold
SuperFamilySSF812966.58E-19395479IPR014756Immunoglobulin E-set
CDDcd001021.24E-5395479No hitNo description
PfamPF018335.3E-10395478IPR002909IPT domain
Gene3DG3DSA:1.25.40.204.2E-13593688IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.973594686IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.24E-14598688IPR020683Ankyrin repeat-containing domain
CDDcd002049.45E-12614686No hitNo description
PfamPF127963.4E-6615687IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0056627656IPR002110Ankyrin repeat
PROSITE profilePS5008811.114627659IPR002110Ankyrin repeat
SMARTSM0001515744766IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.62745774IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-5796851IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000156.4803825IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529804833IPR000048IQ motif, EF-hand binding site
PfamPF006120.014806824IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0056826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791828852IPR000048IQ motif, EF-hand binding site
PfamPF006125.8E-5829848IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MAESGYDIND LVREAQIRWL KPAEVLFILR NHEHHQLSNE PAQKPPSGSL FLFNKRVLRF  60
FRKDGHSWRK KKDGRTVGEA HERLKVGNAE ALNCYYAHGE QNPNFQRRSY WMLDPVYEHI  120
VLVHYRDITE GRQNPAFMSE SSPISSTFSP SPSSYSTQQT GSAVIAGESY EQYQNQFSPG  180
EICSDAVINN NRTSDITGRT NEVMSSPGLE MSQALRRLEE QLSLNDDSFK EIDPLYADAI  240
SDDSSLVEMQ GSSNSLLLQH HSAESSESHH QHLTQDGHIW KDMLDHYGVS TADESLNKSL  300
PKLDENGMLQ ISSERGAIEA YQSYKWPNFS EKEAQKAPIP AFKQLENFKY PAYSPGVTAF  360
GSNSDQCTTI FDQDQIGTSL EDEMSLTISQ KQKFTIRDIS PDWGYSSEAT KVVIIGSFLC  420
NPSECMWTCM FGDTEVPIQI IQEGVICCQA PPHLPGKVTL CVTSGNRESC SEVKEFEYRV  480
KPDDCARNNR SDIEGAYKST EELLLLVRFV QMLLLDLSVH KEDSSELSND FLEKSKANED  540
SWSQVIESLL FGTSTSTITI DWLLQELLKD KFQQWLSYKL QRKDNQMGCS LSKKEQGIIH  600
MVSGLGFEWA LHPILNAGVS VDFRDINGWT ALHWAARFGR EQMVASLIAS GASAGAVTDP  660
SPRDPVGKTA ASIASSCGHK GLAGYLSEVA LTSHLSSLTL VESELSKGTA DVEAEKTISS  720
ISNTSATTNE DQRSLKDSLA AVRNAAQAAA RIQSAFRAHS FRKRQQRESA IATTASGDEY  780
GILSNDILGL SAASKWAFRN TRDYNSAALA IQKKYRGWKG RKDFLAFRQK VVKIQAHVRG  840
YQVRKQYKVC WAVGILEKVV LRWRRRGVGL RGFRHDAESI DESEDEDILK VFRKQKVDAA  900
LDEAVSRVLS MVESPGARQQ YHRILEKYRQ AKVGKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5660480.0JN566048.1 Solanum lycopersicum calmodulin-binding transcription factor SR2L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781562.10.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X2
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1U7WNQ00.0A0A1U7WNQ0_NICSY; calmodulin-binding transcription activator 4-like isoform X2
STRINGXP_009781561.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]