PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009781810.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 246aa    MW: 28422 Da    PI: 6.668
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009781810.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.91e-08981392159
                     -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      r YYrCt++   +C+++k+++r +edp + ++tY g+H ++
  XP_009781810.1  98 RRCYYRCTYKydqECQATKRIQRIKEDPIIYQTTYFGHHICK 139
                     4789*****99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.2E-888140IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-1093140IPR003657WRKY domain
SuperFamilySSF1182901.83E-1096140IPR003657WRKY domain
PfamPF031061.1E-997139IPR003657WRKY domain
PROSITE profilePS508119.8199136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENFESPRTA RKRLIKELIQ GKEFVVQLQT LLQQPLAGDH QADSAHDLIL KIWASFTDAL  60
SELTAFPRSK GSKDFGSEFR KKDKLQVEKN QSGRCYWRRC YYRCTYKYDQ ECQATKRIQR  120
IKEDPIIYQT TYFGHHICKR SQKEPQRQIT ITPESSVVMR EYPPFETNPN VPCKKDQPPS  180
SDNPTTKEED EESKEQTDSN IWKDFMVSSP SVPAIMAADD ISTSLPGLYI DGIFGDFHFA  240
AVTEFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781810.10.0PREDICTED: probable WRKY transcription factor 38
RefseqXP_016437607.10.0PREDICTED: probable WRKY transcription factor 38 isoform X1
TrEMBLA0A1S3XCH70.0A0A1S3XCH7_TOBAC; probable WRKY transcription factor 38 isoform X1
TrEMBLA0A1U7X5Q60.0A0A1U7X5Q6_NICSY; probable WRKY transcription factor 38
STRINGXP_009781810.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2357522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.23e-09WRKY DNA-binding protein 67