PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009782268.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 228aa MW: 25832.8 Da PI: 9.3063

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009782268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.3	2e-31	140	196	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+kl k+rkpylheS h hAl+R+Rg+gGrF XP_009782268.1 140 EEPVFVNAKQYHGILRRRQSRAKAESENKL-LKARKPYLHESWHLHALKRARGCGGRF 196 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.1E-34	138	199	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.006	139	199	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-26	141	196	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.0E-22	142	164	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	144	164	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	7.0E-22	173	196	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEGREKVSLY PDQKSGNGSE REKRIISKKV SRQQSSYNSE NEQPQKQSEV QSQSSSPVDE 60 LSLPGTVPPN MHYFMPSQFR DANAMAQTAY PYSDPYYRGI FAPYDMQPYP AQPYPAQSTV 120 QLQLMGIQQV GVPLPSDTIE EPVFVNAKQY HGILRRRQSR AKAESENKLL KARKPYLHES 180 WHLHALKRAR GCGGRFQSKK NDEYGDKSQA TVNIDSNKIE VTSSEDAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	139	203	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782268.1	1e-170	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	4e-55	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1U7WUI7	1e-168	A0A1U7WUI7_NICSY; nuclear transcription factor Y subunit A-7-like
STRING	XP_009782268.1	1e-169	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-53	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]