PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009782299.1
Organism
Nicotiana sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 180aa    MW: 20370.5 Da    PI: 10.2426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009782299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002990112123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cg+ Fs    L  H+r+H
  XP_009782299.1  90 HDCSICGMEFSLGQALGGHMRRH 112
                     56********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2844673IPR007087Zinc finger, C2H2
PfamPF139121.9E-124670IPR007087Zinc finger, C2H2
SMARTSM003550.184668IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.51E-846112No hitNo description
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PROSITE profilePS501579.88990117IPR007087Zinc finger, C2H2
PfamPF139121.8E-890115IPR007087Zinc finger, C2H2
SMARTSM003550.2690112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTSMKRSREE ERQVEAEAMA NCALMLLSRL NNNNTTSTDR DYHNEFECKT CNKRFQSFQA  60
LGGHRASHKR PKLLTGAGDF LVQSKKNKMH DCSICGMEFS LGQALGGHMR RHRDEINKTS  120
TAAGKTIIPV VGKKMIPVLK KSNSSKRIFC LDLNLTPDVD VDLKLWPTEP VSSPVLRRFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782299.11e-134PREDICTED: zinc finger protein ZAT12-like
RefseqXP_016442063.11e-134PREDICTED: zinc finger protein ZAT12-like
SwissprotQ9SLD43e-37ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3XQ461e-132A0A1S3XQ46_TOBAC; zinc finger protein ZAT12-like
TrEMBLA0A1U7X5Y51e-132A0A1U7X5Y5_NICSY; zinc finger protein ZAT12-like
STRINGXP_009782299.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-38C2H2 family protein