PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009782552.1

Organism

Nicotiana sylvestris

Taxonomic ID

4096

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 162aa MW: 17742.2 Da PI: 10.7518

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009782552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	69.4	1.2e-21	15	91	6	71
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...........s 71 +r+ ++h k +g+dRRvRls++ca +F L ++ G++ ++ tieWLl a+ +i ++ ++s++ s XP_009782552.1 15 KRTRDRHLKTNGKDRRVRLSMSCAQSVFSLMEKIGHKMAGRTIEWLLMHAQSSINAILAKETSASpspqrlppvveS 91 79******************************************************999955555323333322221 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.991	17	71	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.6E-21	17	128	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGVAPPPPPG NRPSKRTRDR HLKTNGKDRR VRLSMSCAQS VFSLMEKIGH KMAGRTIEWL 60 LMHAQSSINA ILAKETSASP SPQRLPPVVE SSIPTTGGNS SVSTHRNRTV LPPFVFCRGL 120 ELGDMEFSRE EIERFASTTT SSESVGSSLP AQHMNVSNEK KC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009782552.1	1e-116	PREDICTED: transcription factor TCP11-like
TrEMBL	A0A1U7WRJ5	1e-115	A0A1U7WRJ5_NICSY; transcription factor TCP11-like
STRING	XP_009782552.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15672	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41030.1	8e-15	TCP family protein